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Saturate or prune an existing DAG

Source: R/saturate_and_prune.R
dag_saturate.Rd

dag_saturate() takes a tidy DAG object and, optionally using existing coordinates, saturates the DAG based on time ordering of the nodes. To create a saturated DAG from scratch, see as_tidy_dagitty.list(). dag_prune() takes an existing DAG and removes edges. This is most useful when used together with saturated DAG.

Usage

dag_saturate(
  .tdy_dag,
  use_existing_coords = FALSE,
  layout = "time_ordered",
  seed = NULL,
  ...
)

dag_prune(.tdy_dag, edges)

Arguments

.tdy_dag

A tidy DAG object.

use_existing_coords

Logical, indicating whether to use existing node coordinates.

layout

a layout available in ggraph. See ggraph::create_layout() for details. Alternatively, "time_ordered" will use time_ordered_coords() to algorithmically sort the graph by time.

seed

a numeric seed for reproducible layout generation

...

optional arguments passed to ggraph::create_layout()

edges

A named character vector where the name is the starting node and the value is the end node, e.g. c("x" = "y") will remove the edge going from x to y.

Value

A tidy_dagitty object

See also

as_tidy_dagitty.list()

Examples

# Example usage:
dag <- dagify(y ~ x, x ~ z)
saturated_dag <- dag_saturate(dag)

saturated_dag %>%
  ggdag(edge_type = "arc")


saturated_dag %>%
  dag_prune(c("x" = "y")) %>%
  ggdag(edge_type = "arc")